bx.align.sitemask.cpg module

Support for masking potential CpG sites in pairwise alignments.

class bx.align.sitemask.cpg.Inclusive(mask='?')

Bases: Masker

class bx.align.sitemask.cpg.Restricted(mask='?')

Bases: Masker

bx.align.sitemask.cpg.mask_columns(masklist, text, mask)

class bx.align.sitemask.cpg.nonCpG(mask='?')

Bases: Masker