bx.bbi.bigbed_file module

BigBed file.

class bx.bbi.bigbed_file.BigBedBlockHandler

Bases: BlockHandler

BlockHandler that parses the block into a series of BED records

class bx.bbi.bigbed_file.BigBedFile

Bases: BBIFile

A “big binary indexed” file whose raw data is in BED format.

get(chrom, start, end): Gets all data points over the regions chrom:start-end.

class bx.bbi.bigbed_file.IntervalAccumulatingBlockHandler: Bases: BigBedBlockHandler

class bx.bbi.bigbed_file.SummarizingBlockHandler

Accumulates intervals into a SummarizedData