bx.intervals.intersection_tests module

class bx.intervals.intersection_tests.IntervalTreeTest(methodName='runTest')

Bases: TestCase

setUp()

Hook method for setting up the test fixture before exercising it.

test_empty()

test_find()

test_public_interval()

test_traverse()

class bx.intervals.intersection_tests.LotsaTestCase(methodName='runTest')

Bases: TestCase

put lotsa data in the tree and make sure it works

setUp()

Hook method for setting up the test fixture before exercising it.

test_count()

test_find()

test_max_dist()

class bx.intervals.intersection_tests.NeighborTestCase(methodName='runTest')

Bases: TestCase

setUp()

Hook method for setting up the test fixture before exercising it.

test_left()

test_right()

test_toomany()

class bx.intervals.intersection_tests.UpDownStreamTestCase(methodName='runTest')

Bases: TestCase

setUp()

Hook method for setting up the test fixture before exercising it.

test_downstream()

test_n()

test_upstream()