bx.seq.core module

Support for “biological sequence” files.

Author:

Bob Harris (rsharris@bx.psu.edu)

See seq.py for more information

bx.seq.core.infer_format(file)

bx.seq.core.reverse_complement(text)

bx.seq.core.seq_file(file, format=None, revcomp=False, name='', gap=None, contig=None)

bx.seq.core.seq_reader(file, format=None, revcomp=False, name='', gap=None)

bx.seq.core.seq_writer(outfile, format=None, name='')