bx.seq.twobit module

Access to files containing sequence data in ‘twobit’ format.

class bx.seq.twobit.TwoBitFile(file: BinaryIO, do_mask: bool = True)

Bases: Mapping

load_sequence(name: str) → None

read(pattern: str, untuple: bool = True)

read_block_coords() → Tuple[list, list]

read_p_string() → str

Read a length-prefixed string

class bx.seq.twobit.TwoBitSequence(tbf, header_offset=None)

Bases: object

get(start, end)

masked_block_sizes: List

masked_block_starts: List

n_block_sizes: List

n_block_starts: List