bx.intervals.operations.quicksect module

Intersects … faster. Suports GenomicInterval datatype and multiple chromosomes.

class bx.intervals.operations.quicksect.IntervalNode(start, end, linenum=0, other=None)

Bases: object

insert(start, end, linenum=0, other=None)

intersect(start, end, report_func)

rotateleft()

rotateright()

traverse(func)

class bx.intervals.operations.quicksect.IntervalTree

Bases: object

insert(interval, linenum=0, other=None)

intersect(interval, report_func)

traverse(func)

bx.intervals.operations.quicksect.bad_sect(lst, int_start, int_end)

bx.intervals.operations.quicksect.main()

bx.intervals.operations.quicksect.test_func(node)