bx.bbi package

Submodules

• bx.bbi.bbi_file module
  • BBIFile
    • BBIFile.level_list
    • BBIFile.magic
    • BBIFile.open()
    • BBIFile.query()
    • BBIFile.summarize()
    • BBIFile.summarize_from_full()
    • BBIFile.version
    • BBIFile.zoom_levels
  • BlockHandler
  • SummarizedData
    • SummarizedData.end
    • SummarizedData.max_val
    • SummarizedData.min_val
    • SummarizedData.size
    • SummarizedData.start
    • SummarizedData.sum_data
    • SummarizedData.sum_squares
    • SummarizedData.valid_count
  • SummaryBlock
    • SummaryBlock.chrom_id
    • SummaryBlock.end
    • SummaryBlock.max_val
    • SummaryBlock.min_val
    • SummaryBlock.start
    • SummaryBlock.sum_data
    • SummaryBlock.sum_squares
    • SummaryBlock.valid_count
  • ZoomLevel
    • ZoomLevel.data_offset
    • ZoomLevel.index_offset
    • ZoomLevel.reduction_level
• bx.bbi.bigbed_file module
  • BigBedBlockHandler
  • BigBedFile
    • BigBedFile.get()
  • IntervalAccumulatingBlockHandler
  • SummarizingBlockHandler
• bx.bbi.bigwig_file module
  • ArrayAccumulatingBlockHandler
  • BigWigBlockHandler
  • BigWigFile
    • BigWigFile.get()
    • BigWigFile.get_as_array()
    • BigWigFile.get_headers()
  • BigWigHeaderBlockHandler
  • IntervalAccumulatingBlockHandler
  • SummarizingBlockHandler
• bx.bbi.bigwig_tests module
• bx.bbi.bpt_file module
  • BPTFile
    • BPTFile.attach()
    • BPTFile.find()
    • BPTFile.r_find()
• bx.bbi.cirtree_file module
  • CIRTreeFile
    • CIRTreeFile.attach()
    • CIRTreeFile.find_overlapping_blocks()
    • CIRTreeFile.r_find_overlapping()
    • CIRTreeFile.r_find_overlapping_leaf()
    • CIRTreeFile.r_find_overlapping_parent()

Module contents

Support for the UCSC “Big Binary Indexed” file formats (bigWig and bigBed)