bx-python

Contents:

  • Application Documentation
    • bx package
      • Subpackages
        • bx.align package
        • bx.arrays package
        • bx.bbi package
        • bx.cookbook package
        • bx.intervals package
        • bx.intseq package
        • bx.misc package
        • bx.motif package
        • bx.phylo package
        • bx.pwm package
        • bx.seq package
        • bx.tabular package
      • Submodules
      • Module contents
    • bx_extras package
bx-python
  • lib
  • bx package
  • bx.motif package
  • View page source

bx.motif package

Subpackages

  • bx.motif.io package
    • Submodules
      • bx.motif.io.transfac module
      • bx.motif.io.transfac_tests module
    • Module contents
  • bx.motif.logo package
    • Module contents
      • eps_logo()
      • freqs_to_heights()

Submodules

  • bx.motif.pwm module
    • BaseMatrix
      • BaseMatrix.create_from_other()
      • BaseMatrix.from_rows()
      • BaseMatrix.reverse_complement()
      • BaseMatrix.width
    • FrequencyMatrix
      • FrequencyMatrix.DEFAULT_CORRECTION
      • FrequencyMatrix.to_logodds_scoring_matrix()
      • FrequencyMatrix.to_stormo_scoring_matrix()
    • ScoringMatrix
      • ScoringMatrix.score_string()
      • ScoringMatrix.score_string_with_gaps()
  • bx.motif.pwm_tests module
    • get_ctcf_rows()
    • test_create()
    • test_scoring()
    • test_scoring_with_gaps()

Module contents

Previous Next

© Copyright 2005-2019, James Taylor; 2019-2023, Nicola Soranzo.

Built with Sphinx using a theme provided by Read the Docs.