Python Module Index

b | p


	b
	`bx`
	`bx.align`
	`bx.align.axt`
	`bx.align.core`
	`bx.align.epo`
	`bx.align.epo_tests`
	`bx.align.lav`
	`bx.align.lav_tests`
	`bx.align.maf`
	`bx.align.maf_tests`
	`bx.align.score`
	`bx.align.score_tests`
	`bx.align.sitemask`
	`bx.align.sitemask.core`
	`bx.align.sitemask.cpg`
	`bx.align.sitemask.quality`
	`bx.align.sitemask.sitemask_tests`
	`bx.align.tools`
	`bx.align.tools.chop`
	`bx.align.tools.fuse`
	`bx.align.tools.thread`
	`bx.align.tools.tile`
	`bx.arrays`
	`bx.arrays.array_tree`
	`bx.arrays.array_tree_tests`
	`bx.arrays.bed`
	`bx.arrays.wiggle`
	`bx.bbi`
	`bx.bbi.bbi_file`
	`bx.bbi.bigbed_file`
	`bx.bbi.bigwig_file`
	`bx.bbi.bpt_file`
	`bx.bbi.cirtree_file`
	`bx.binned_array`
	`bx.bitset`
	`bx.bitset_builders`
	`bx.bitset_tests`
	`bx.bitset_utils`
	`bx.cookbook`
	`bx.cookbook.argparse`
	`bx.cookbook.attribute`
	`bx.cookbook.doc_optparse`
	`bx.cookbook.progress_bar`
	`bx.filter`
	`bx.gene_reader`
	`bx.interval_index_file`
	`bx.interval_index_file_tests`
	`bx.intervals`
	`bx.intervals.cluster`
	`bx.intervals.cluster_tests`
	`bx.intervals.intersection`
	`bx.intervals.intersection_tests`
	`bx.intervals.io`
	`bx.intervals.operations`
	`bx.intervals.operations.base_coverage`
	`bx.intervals.operations.complement`
	`bx.intervals.operations.concat`
	`bx.intervals.operations.coverage`
	`bx.intervals.operations.find_clusters`
	`bx.intervals.operations.intersect`
	`bx.intervals.operations.join`
	`bx.intervals.operations.merge`
	`bx.intervals.operations.quicksect`
	`bx.intervals.operations.subtract`
	`bx.intervals.random_intervals`
	`bx.intseq`
	`bx.intseq.ngramcount`
	`bx.misc`
	`bx.misc.bgzf`
	`bx.misc.bgzf_tests`
	`bx.misc.binary_file`
	`bx.misc.cdb`
	`bx.misc.cdb_tests`
	`bx.misc.filecache`
	`bx.misc.filecache_tests`
	`bx.misc.readlengths`
	`bx.misc.seekbzip2`
	`bx.misc.seekbzip2_tests`
	`bx.misc.seeklzop`
	`bx.misc.seeklzop_tests`
	`bx.motif`
	`bx.motif.io`
	`bx.motif.io.transfac`
	`bx.motif.io.transfac_tests`
	`bx.motif.logo`
	`bx.motif.pwm`
	`bx.motif.pwm_tests`
	`bx.phylo`
	`bx.phylo.newick`
	`bx.phylo.phast`
	`bx.phylo.phast_tests`
	`bx.pwm`
	`bx.pwm.bed_score_aligned_pwm`
	`bx.pwm.bed_score_aligned_string`
	`bx.pwm.maf_select_motifs`
	`bx.pwm.position_weight_matrix`
	`bx.pwm.pwm_score_maf`
	`bx.pwm.pwm_score_motifs`
	`bx.pwm.pwm_score_positions`
	`bx.pwm.pwm_tests`
	`bx.seq`
	`bx.seq.core`
	`bx.seq.fasta`
	`bx.seq.fasta_tests`
	`bx.seq.nib`
	`bx.seq.nib_tests`
	`bx.seq.qdna`
	`bx.seq.qdna_tests`
	`bx.seq.seq`
	`bx.seq.seq_tests`
	`bx.seq.twobit`
	`bx.seqmapping`
	`bx.seqmapping_tests`
	`bx.tabular`
	`bx.tabular.io`
	`bx.wiggle`
	`bx.wiggle_tests`
	`bx_extras`
	`bx_extras.fpconst`
	`bx_extras.lrucache`
	`bx_extras.pstat`
	`bx_extras.pyparsing`
	`bx_extras.stats`

	p
	`psyco_full`